选定的出版物
#:平等的贡献
2022年
德鲁兹智慧化,Hernando, B., Tarabichi, M., Haase, K., Lesluyes, T., Smith, P.S., Morrill Gavarró, L., Couturier, D.L., Liu, L., Schneider, M., Brenton, J.D.,范厕所,P。麦金太尔,G。#,Markowetz, F.#(2022)。染色体不稳定的pan-cancer纲要。自然,606:976 - 983。
斯蒂尔C.D.Abbasi,。,Islam, S.M.A., Bowes, A.L., Khandekar, A., Haase, K., Hames-Fathi, S., Ajayi, D., Verfaillie, A., Dhami, P., McLatchie, A., Lechner, M., Light, N., Shlien, A., Malkin, D., Feber, A., Proszek, P., Lesluyes, T., Mertens, F., Flanagan, A.M., Tarabichi, M.,范厕所,P。Alexandrov,第2#皮莱,N。#(2022)。签名的拷贝数变化在人类癌症。自然,606:984 - 991。
曹,S。#王,jr#霁,S。#杨,P。戴,Y。郭,S。,Montierth, M.D., Shen, J.P., Zhao, X., Chen, J., Lee, J.J., Guerrero, P.A., Spetsieris, N., Engedal, N., Taavitsainen, S., Yu, K., Livingstone, J., Bhandari, V., Hubert, S.M., Daw, N.C., Futreal, P.A., Efstathiou, E., Lim, B., Viale, A., Zhang, J., Nykter, M., Czerniak, B.A., Brown, P.H., Swanton, C., Msaouel, P., Maitra, A., Kopetz, S., Campbell, P., Speed, T.P., Boutros, P.C., Zhu, H., Urbanucci, A., Demeulemeester, J.,范厕所,P王,w (2022)。估计在15癌症肿瘤细胞总mRNA表达的预测疾病进展。自然生物技术,40:1624 - 1633。
考夫曼,T.L.#佩特科维奇,M。#沃特金斯,T.B.K.#Colliver,。、Laskina年代。Thapa, N。,Minussi特区。纳文,N。,Swanton C。,范厕所,P•哈斯K。,Tarabichi, M。,Schwarz, R.F. (2022). MEDICC2: whole-genome doubling aware copy-number phylogenies for cancer evolution.基因组生物学,23:241。
十字架,W。,Lyskjær, I., Lesluyes, T., Hargreaves, S., Strobl, A.C., Davies, C., Waise, S., Hames-Fathi, S., Oukrif, D., Ye, H., Amary, F., Tirabosco, R., Gerrand, C., Baker, T., Barnes, D., Steele, C., Alexandrov, L., Bond, G.; Genomics England Research Consortium, Cool, P., Pillay, N.,范厕所,P。#弗拉纳根,点#(2022)。中央软骨肉瘤的遗传模型演化与病人的结果。基因组医学,14:99。
Bowes A.L.,Tarabichi, M。皮莱,N。范厕所,P。(2022)。利用单细胞测序解开intratumour异质性和肿瘤进化的人类癌症。《华尔街日报》的病理,257:466 - 478。审查。
Demeulemeester, J。Dentro,南卡罗来纳州Gerstung, M。,范厕所,P。(2022)。Biallelic突变在癌症基因组显示当地的突变因素。自然遗传学,54:128 - 133。
2021年
Tarabichi, M。,Demeulemeester, J。Verfaillie,。弗拉纳根,点,范厕所,P。#Konopka, T。#(2021)。体替换的pan-cancer景观非唯一的人类基因组区域。自然生物技术,39:1589 - 1596。
燕,H。,Tarabichi, M。,印度,N。,范厕所,P。(2021)。DeCiFering subclonal成分的肿瘤。电池系统12 (10):955 - 957。预览。
美国南卡罗来纳州Dentro#Leshchiner,我。#•哈斯K。#Tarabichi, M。#Wintersinger, J。#、Deshwar A.G.#Yu, K。#Rubanova, Y。#麦金太尔,G。#Demeulemeester, J。#Vazquez-Garcia,我。Kleinheinz, K。、Livitz D.G.、Malikic年代。Donmez, N。,Sengupta, S., Anur, P., Jolly, C., Cmero, M., Rosebrock, D., Schumacher, S.E., Fan, Y., Fittall, M., Drews, R.M., Yao, X., Watkins, T.B.K., Lee, J., Schlesner, M., Zhu, H., Adams, D.J., McGranahan, N., Swanton, C., Getz, G., Boutros, P.C., Imielinski, M., Beroukhim, R., Sahinalp, S.C., Ji, Y., Peifer, M., Martincorena, I., Markowetz, F., Mustonen, V., Yuan, K., Gerstung, M., Spellman, P.T., Wang, W.#莫里斯,Q.D.#,楔形特区。#,范厕所,P。#代表PCAWG进化和异质性工作组和PCAWG财团(2021)。在2658年人类癌症基因组特征基因intra-tumor异质性。细胞,184:2239 - 2254。
Tarabichi, M。#Salcedo,。#、Deshwar A.G.#倪Leathlobhair, M。#Wintersinger, J。,楔形特区。#,范厕所,P。#莫里斯,Q.D.#加利,个人电脑#(2021)。一个实用指南的癌症subclonal重建从DNA测序。自然方法,18:144 - 155。审查。
Minussi特区。#尼克尔森,医学博士#,你们,H。#戴维斯分校。王,K。,Baker, T., Tarabichi, M., Sei, E., Du, H., Rabbani, M., Peng, C., Hu, M., Bai, S., Lin, Y., Schalck, A., Multani, A., Ma, J., McDonald, T.O., Casasent, A., Barrera, A., Chen, H., Lim, B., Arun, B., Meric-Bernstam, F.,范厕所,P。Michor F。#纳文,N.E.#(2021)。乳房肿瘤Subclonal多样性的维持一个水库在扩张。自然,592:302 - 308。
2020年
Gerstung, M。#快活,C。#Leshchiner,我。#Dentro,南卡罗来纳州#冈萨雷斯,S。#Rosebrock D。,Mitchell, T.J., Rubanova, Y., Anur, P., Yu, K., Tarabichi, M., Deshwar, A., Wintersinger, J., Kleinheinz, K., Vázquez-García, I., Haase, K., Jerman, L., Sengupta, S., Macintyre, G., Malikic, S., Donmez, N., Livitz, D.G., Cmero, M., Demeulemeester, J., Schumacher, S., Fan, Y., Yao, X., Lee, J., Schlesner, M., Boutros, P.C., Bowtell, D.D., Zhu, H., Getz, G., Imielinski, M., Beroukhim, R., Sahinalp, S.C., Ji, Y., Peifer, M., Markowetz, F., Mustonen, V., Yuan, K., Wang, W., Morris, Q.D., PCAWG Evolution and Heterogeneity Working Group, Spellman, P.T.#,楔形特区。#,范厕所,P。#;PCAWG财团(2020)。2658年的进化史癌症。自然,578:122 - 128。
ICGC / TCGA Pan-Cancer分析整个基因组的财团(2020)。Pan-cancer整个基因组的分析。自然,578:82 - 93。
Salcedo,。#Tarabichi, M。#Espiritu, smg#、Deshwar A.G.#,大卫,M。,Wilson, N.M., Dentro, S., Wintersinger, J.A., Liu, L.Y., Ko, M., Sivanandan, S., Zhang, H., Zhu, K., Ou Yang, T.H., Chilton, J.M., Buchanan, A., Lalansingh, C.M., P'ng, C., Anghel, C.V., Umar, I., Lo, B., Zou, W., DREAM SMC-Het Participants, Simpson, J.T., Stuart, J.M., Anastassiou, D., Guan, Y., Ewing, A.D., Ellrott, K.#,楔形特区。#莫里斯,Q.D.#,范厕所,P。#加利,个人电脑#(2020)。一个社区努力创建标准评估肿瘤subclonal重建。自然生物技术,38:97 - 107。
沃特金斯,T.B.K.#Lim, E.L.#佩特科维奇,M。、Elizalde年代。,Birkbak, N.J., Wilson, G.A., Moore, D.A., Gronroos. E., Rowan, A., Dewhurst, S.M., Demeulemeester, J., Dentro, S.C., Horswell, S., Au, L., Haase, K., Escudero, M., Rosenthal, R., Al Bakir, M., Xu, H., Litchfield, K., Lu, W.T., Mourikis, T.P., Dietzen, M., Spain, L., Cresswell, G.D., Biswas, D., Lamy, P., Nordentoft, I., Harbst, K., Castro-Giner, F., Yates, L.R., Caramia, F., Jaulin, F., Vicier, C., Tomlinson, I.P.M., Brastianos, P.K., Cho, R.J., Bastian, B.C., Dyrskjot, L., Jonsson, G.B., Savas, P., Loi, S., Campbell, P.J., Andre, F., Luscombe, N.M., Steeghs, N., Tjan-Heijnen, V.C.G., Szallasi, Z., Turajlic, S., Jamal-Hanjani, M.,范厕所,P。支持,克里施瓦兹,水#印度,N。#Swanton C。#(2020)。普遍的染色体不稳定和核型顺序肿瘤进化。自然,587:126 - 132。
2019年
Fittall,分子量,范厕所,P。(2019)。翻译见解肿瘤临床实践进化:承诺和挑战。基因组医学城南。审查。
罗森塔尔,R。,Cadieux, E.L.#萨尔加多,R。#巴克尔,硕士#摩尔,D.A.#环境,比较温度#隆德,T。#Tanić,M。,Reading, J.L., Joshi, K., Henry, J.Y., Ghorani, E., Wilson, G.A., Birkbak, N.J., Jamal-Hanjani, M., Veeriah, S., Szallasi, Z., Loi, S., Hellmann, M.D., Feber, A., Chain, B., Herrero, J., Quezada, S.A., Demeulemeester, J.,范厕所,P。贝克,S。,印度,N。Swanton C。;TRACERx财团。(2019)。Neoantigen-directed肺癌免疫逃避进化。自然,567:479 - 485。
斯蒂尔C.D.,Tarabichi, M。Oukrif D。,Webster, A.P., Ye, H., Fittall, M., Lombard, P., Martincorena, I., Tarpey, P.S., Collord, G., Haase, K., Strauss, S.J., Berisha, F., Vaikkinen, H., Dhami, P., Jansen, M., Behjati, S., Amary, M.F., Tirabosco, R., Feber, A., Campbell, P.J., Alexandrov, L.B.,范厕所,P。弗拉纳根,点,Pillay, N. (2019). Undifferentiated sarcomas develop through distinct evolutionary pathways.癌症细胞,35:441 - 456. e8。
2018年
Tarabichi, M。,Martincorena,我。Gerstung, M。Leroi, A.M., Markowetz, F., PCAWG Evolution and Heterogeneity Working Group, Spellman, P.T., Morris, Q.D., Lingjærde, O.C., Wedge, D.C.,范厕所,P。(2018)。中性肿瘤进化?自然遗传学,50:1630 - 1633。信件。
快活,C。范厕所,P。(2018)。时机体细胞事件发展的癌症。基因组生物学,19:95。审查。
Turajlic, S。#徐,H。#Litchfield, K。#罗文,。#、Horswell年代。#钱伯斯,T。#O ' brien, T。#洛佩兹,系统#沃特金斯,T.B.K.考,D。,Stares, M., Challacombe, B., Hazell, S., Chandra, A., Mitchell, T.J., Au, L., Eichler-Jonsson, C., Jabbar, F., Soultati, A., Chowdhury, S., Rudman, S., Lynch, J., Fernando, A., Stamp, G., Nye, E., Stewart, A., Xing, W., Smith, J.C., Escudero, M., Huffman, A., Matthews, N., Elgar, G., Phillimore, B., Costa, M., Begum, S., Ward, S., Salm, M., Boeing, S., Fisher, R., Spain, L., Navas, C., Grönroos, E., Hobor, S., Sharma, S., Aurangzeb, I., Lall, S., Polson, A., Varia, M., Horsfield, C., Fotiadis, N., Pickering, L., Schwarz, R.F., Silva, B., Herrero, J., Luscombe, N.M., Jamal-Hanjani, M., Rosenthal, R., Birkbak, N.J., Wilson, G.A., Pipek, O., Ribli, D., Krzystanek, M., Csabai, I., Szallasi, Z., Gore, M., McGranahan, N.,范厕所,P。坎贝尔,P。拉金,J。,Swanton C。;TRACERx肾财团(2018)。确定性的进化轨迹影响原发肿瘤增长:TRACERx肾。细胞,173:595 e11——610.。
2017年
印度,N。#罗森塔尔,R。#环境,比较温度罗文,抗干扰,沃特金斯,T.B.K.威尔逊,G.A.,Birkbak, N.J., Veeriah, S.,范厕所,P。埃雷罗,J。Swanton C。;TRACERx财团(2017)。Allele-Specific HLA损失和免疫逃避肺癌进化。细胞,171:1259 e11——1271.。
程,J。#Demeulemeester, J。#、楔。Vollan, H.K.M., Pitt, J.J., Russnes, H.G., Pandey, B.P., Nilsen, G., Nord, S., Bignell, G.R., White, K.P., Børresen-Dale, A.L., Campbell, P.J., Kristensen, V.N., Stratton, M.R., Lingjærde, O.C., Moreau, Y.,范厕所,P。(2017)。Pan-cancer分析纯合缺失的主要肿瘤发现罕见的肿瘤抑制。自然通讯,8:1221。
Martincorena,我。雷恩,K.M.,Gerstung, M。,Dawson, K.J., Haase, K.,范厕所,P。、戴维斯、H。Stratton, M.R., Campbell, P.J. (2017). Universal Patterns of Selection in Cancer and Somatic Tissues.细胞,171:1029 e21——1041.。
耶茨,L.R.#、Knappskog年代。#楔形,D。,Farmery, J.H.R., Gonzalez, S., Martincorena, I., Alexandrov, L.B.,范厕所,P。Haugland,香港、Lilleng P.K.Gundem, G。,Gerstung, M。,Pappaemmanuil, E., Gazinska, P., Bhosle, S.G., Jones, D., Raine, K., Mudie, L., Latimer, C., Sawyer, E., Desmedt, C., Sotiriou, C., Stratton, M.R., Sieuwerts, A.M., Lynch, A.G., Martens, J.W., Richardson, A.L., Tutt, A., Lønning, P.E.#坎贝尔,P.J.#(2017)。基因组的进化乳腺癌转移和复发。癌症细胞,32:169 - 184. e7。
Jamal-Hanjani, M。#威尔逊,G.A.#印度,N。#Birkbak,新泽西州#沃特金斯,T.B.K.#、Veeriah年代。#戴尔·S。,Johnson, D.H., Mitter, R., Rosenthal, R., Salm, M., Horswell, S., Escudero, M., Matthews, N., Rowan, A., Chambers, T., Moore, D.A., Turajlic, S., Xu, H., Lee, S.M., Forster, M.D., Ahmad, T., Hiley, C.T., Abbosh, C., Falzon, M., Borg, E., Marafioti, T., Lawrence, D., Hayward, M., Kolvekar, S., Panagiotopoulos, N., Janes, S.M., Thakrar, R., Ahmed, A., Blackhall, F., Summers, Y., Shah, R., Joseph, L., Quinn, A.M., Crosbie, P.A., Naidu, B., Middleton, G., Langman, G., Trotter, S., Nicolson, M., Remmen, H., Kerr, K., Chetty, M., Gomersall, L., Fennell, D.A., Nakas, A., Rathinam, S., Anand, G., Khan, S., Russell, P., Ezhil, V., Ismail, B., Irvin-Sellers, M., Prakash, V., Lester, J.F., Kornaszewska, M., Attanoos, R., Adams, H., Davies, H., Dentro, S., Taniere, P., O'Sullivan, B., Lowe, H.L., Hartley, J.A., Iles, N., Bell, H., Ngai, Y., Shaw, J.A., Herrero, J., Szallasi, Z., Schwarz, R.F., Stewart, A., Quezada, S.A., Le Quesne, J.,范厕所,P。潜水,C。,Hackshaw, A., Swanton, C.; TRACERx Consortium (2017). Tracking the Evolution of Non-Small-Cell Lung Cancer.新英格兰医学杂志》上,376:2109 - 2121。
美国南卡罗来纳州Dentro楔形,D。C.,范厕所,P。(2017)。的原则重建subclonal架构的癌症。在癌症进化(冷泉港实验室出版社)。Swanton C。,Bardelli, A., Shah, S., Polyak, K., Graham, T. (eds.).
2016年
Demeulemeester, J。#库马尔,P。#、Møller E.K.#、北部,S。,Wedge, D.C., Peterson, A., Mathiesen, R.R., Fjelldal, R., Zamani Esteki, M., Theunis, K., Fernandez Gallardo, E., Grundstad, A.J., Borgen, E., Baumbusch, L.O., Børresen-Dale, A.L., White, K.P.#,Kristensen V.N.#,范厕所,P。#沃特,T。#,Naume B。#(2016)。跟踪传播肿瘤细胞的起源在乳腺癌使用单细胞测序。基因组生物学,17:250。
Alexandrov,第2居,屈服强度,Haase, K.,范厕所,P。Martincorena,我。、Nik-Zainal年代。Totoki, Y。,Fujimoto, A., Nakagawa, H., Shibata, T., Campbell, P.J., Vineis, P., Phillips, D.H., Stratton, M.R. (2016). Mutational signatures associated with tobacco smoking in human cancer.科学,354:618 - 622。
2015年
Martincorena,我。罗山,。,Gerstung, M。,Ellis, P.,范厕所,P。麦克拉伦、S。,楔形特区。Fullam,。,Alexandrov,第2、Tubio J.M.,Stebbings, L., Menzies, A., Widaa, S., Stratton, M.R., Jones, P.H., Campbell, P.J. (2015). High burden and pervasive positive selection of somatic mutations in normal human skin.科学,348:880 - 886。
Gundem, G。,范厕所,P。,Kremeyer B。,Alexandrov,第2、Tubio J.M.C.,Papaemmanuil, E., Brewer, D.S., Kallio, H.M.L., Hӧgnäs, G., Annala, M., Kivinummi, K., Goody, V., Latimer, C., O’Meara, S., Dawson, K.J., Isaacs, W., Emmert-Buck, M.R., Nykter, M., Foster, C., Kote-Jarai, Z., Easton, D., Whitaker, H.C., ICGC Prostate UK Group, Neal, D.E., Cooper, C.S., Eeles, R.A., Visakorpi, T., Campbell, P.J., McDermott, U.#,楔形特区。#介绍,9#(2015)。致命的转移性前列腺癌的进化历史。自然,520:353 - 357。
库珀C.S.#伊尔斯,R。#,楔形特区。#,范厕所,P。#Gundem, G。,Alexandrov,第2,Kremeyer B。巴特勒,。,Lynch, A.G., Camacho, N., Massie, C.E., Kay, J., Luxton, H.J., Edwards, S., Kote-Jarai, Z., Dennis, N., Merson, S., Leongamornlert, D., Zamora, J., Corbishley, C., Thomas, S., Nik-Zainal, S., Ramakrishna, M., O'Meara, S., Matthews, L., Clark, J., Hurst, R., Mithen, R., Bristow, R.G., Boutros, P.C., Fraser, M., Cooke, S., Raine, K., Jones, D., Menzies, A., Stebbings, L., Hinton, J., Teague, J., McLaren, S., Mudie, L., Hardy, C., Anderson, E., Joseph, O., Goody, V., Robinson, B., Maddison, M., Gamble, S., Greenman, C., Berney, D., Hazell, S., Livni, N.; the ICGC Prostate Group, Fisher, C., Ogden, C., Kumar, P., Thompson, A., Woodhouse, C., Nicol, D., Mayer, E., Dudderidge, T., Shah, N.C., Gnanapragasam, V., Voet, T., Campbell, P., Futreal, A., Easton, D., Warren, A.Y.#、培养、C.S.#斯特拉顿,核磁共振惠特克,H.C.#麦克德莫特,U。#布鲁尔,科学博士#尼尔,D.E.#(2015)。多病灶的前列腺癌基因发展史的分析确定了多个独立的克隆扩张在肿瘤和正常前列腺组织形态。自然遗传学,47:367 - 372。
2014年
李,Y。#施瓦布C。#瑞安,S.L.#Papaemmanuil E。罗宾逊,莫莱森雅各布斯,P。,Moorman, A.V., Dyer, S., Borrow, J., Griffiths, M., Heerema, N.A., Carroll, A.J., Talley, P., Bown, N., Telford, N., Ross, F.M., Gaunt, L., McNally, R.J., Young, B.D., Sinclair, P., Rand, V., Teixeira, M.R., Joseph, O., Robinson, B., Maddison, M., Dastugue, N., Vandenberghe, P., Haferlach, C., Stephens, P.J., Cheng, J.,范厕所,P。斯特拉顿,核磁共振坎贝尔,P.J.#哈里森,C.J.#(2014)。宪法和体细胞的21号染色体重排急性淋巴细胞白血病。自然,508:98 - 102。
范厕所,P。沃特,t (2014)。癌症基因组的单细胞分析。当前在遗传学和发展意见,24:82 - 91。
2012年
Nik-Zainal, S。#,范厕所,P。#,楔形特区。#Alexandrov,商量后,Greenman, C.D., Lau, K.W., Raine, K., Jones, D., Marshall, J., Ramakrishna, M., Shlien, A., Cooke, S.L., Hinton, J., Menzies, A., Stebbings, L.A., Leroy, C., Jia, M., Rance, R., Mudie, L.J., Gamble, S.J., Stephens, P.J., McLaren, S., Tarpey, P.S., Papaemmanuil, E., Davies, H.R., Varela, I., McBride, D.J., Bignell, G.R., Leung, K., Butler, A.P., Teague, J.W., Martin, S., Jönsson, G., Mariani, O., Boyault, S., Miron, P., Fatima, A., Langerød, A., Aparicio, S.A.J.R., Tutt, A., Sieuwerts, A.M., Borg, Å., Thomas, G., Salomon, A.V., Richardson, A.L., Børresen-Dale, A.-L., Futreal, P.A., Stratton, M.R., Campbell, P.J.; for the Breast Cancer Working Group of the International Cancer Genome Consortium (2012). The life history of 21 breast cancers.细胞,149:994 - 1007。
史蒂芬斯P.J.#Tarpey,注:#、戴维斯、H。范厕所,P。格林曼,C。、楔。Nik-Zainal, S。马丁,S。万利拉,我。,Bignell, G.R., Yates, L.R., Papaemmanuil, E., Beare, D., Butler, A., Cheverton, A., Gamble, J., Hinton, J., Jia, M., Jayakumar, A., Jones, D., Latimer, C., Lau, K.W., McLaren, S., McBride, D.J., Menzies, A., Mudie, L., Raine, K., Rad, R., Chapman, M.S., Teague, J., Easton, D., Langerød, A., Oslo Breast Cancer Consortium (OSBREAC), Lee, M.T., Shen, C.Y., Tee, B.T., Huimin, B.W., Broeks, A., Vargas, A.C., Turashvili, G., Martens, J., Fatima, A., Miron, P., Chin, S.F., Thomas, G., Boyault, S., Mariani, O., Lakhani, S.R., van de Vijver, M., van 't Veer, L., Foekens, J., Desmedt, C., Sotiriou, C., Tutt, A., Caldas, C., Reis-Filho, J.S., Aparicio, S.A.J.R., Salomon, A.V., Børresen-Dale, A.-L., Richardson, A.L., Campbell, P.J., Futreal, P.A., Stratton, M.R. (2012). The landscape of cancer genes and mutational processes in breast cancer.自然,486:400 - 404。
2010年
范厕所,P。#Nordgard,萨达姆政权#Lingjærde,超频、Russnes H.G.、黑麦、I.H.,太阳,W。,Weigman, V.J., Marynen P., Zetterberg, A., Naume, B., Perou, C.M., Børresen-Dale, A.-L.#,Kristensen V.N.#(2010)。Allele-specific拷贝数分析肿瘤。美国国家科学院院刊》上的美利坚合众国,107:16910 - 16915。